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Preprint
A model of pan-immunity maintenance by horizontal gene transfer in the ecological dynamics of bacteria and phages.
Wenping Cui, Jemma M. Fendley, Sriram Srikant and Boris Shraiman
arXiv:2402.19388Les Houches Lectures on Community Ecology: From Niche Theory to Statistical Mechanics.
Wenping Cui, Robert Marsland III, Pankaj Mehta
arXiv:2403.05497
2024
- An elementary mean-field approach to the spectral densities of random matrix ensembles.
Wenping Cui, Jason W. Rocks, Pankaj Mehta
Physica A: Statistical Mechanics and its Applications: 129608 (2024)
2021
- Diverse communities behave like typical random ecosystems.
Wenping Cui, Robert Marsland III, Pankaj Mehta
Phys. Rev. E 104, 034416 (2021)
2020
The Minimum Environmental Perturbation Principle: A New Perspective on Niche Theory.
Robert Marsland III, Wenping Cui, Pankaj Mehta
The American Naturalist 196.3 (2020): 291-305.Machine Learning as Ecology.
Owen Howell, Wenping Cui, Robert Marsland III, and Pankaj Mehta
J. Phys. A: Math. Theor. 53 (2020): 334001.Effect of resource dynamics on species packing in diverse ecosystems.
Wenping Cui, Robert Marsland III, Pankaj Mehta
Phys. Rev. Lett. 125, 048101 (2020)
Editors’ Suggestion, see also the synopsis in Physics Magazine: Resource Dynamics Dictate Diversity.The Community Simulator: A Python package for microbial ecology.
Robert Marsland III, Wenping Cui, Joshua Goldford, and Pankaj Mehta
Plos one 15.3 (2020): e0230430.A minimal model for microbial biodiversity can reproduce experimentally observed ecological patterns.
Robert Marsland III, Wenping Cui, Pankaj Mehta
Sci Rep 10, 3308 (2020)
2019
The Thermodynamic Uncertainty Relation in Biochemical Oscillations.
Robert Marsland III, Wenping Cui, Jordan Horowitz
Journal of the Royal Society Interface 16.154 (2019): 20190098.Constrained optimization as ecological dynamics with applications to random quadratic programming in high dimensions.
Pankaj Mehta, Wenping Cui, Ching-Hao Wang, Robert Marsland III
Phys. Rev. E. 99,052111(2019).Available energy fluxes drive a phase transition in the diversity, stability, and functional structure of microbial communities.
Robert Marsland III, Wenping Cui, Joshua Goldford, Alvaro Sanchez, Kirill Korolev, Pankaj Mehta
PLoS computational biology 15.2 (2019): e1006793.
2018
- Identifying feasible operating regimes for early T-cell recognition: The speed, energy, accuracy trade-off in kinetic proofreading and adaptive sorting.
Wenping Cui, Pankaj Mehta
PloS one 13.8 (2018): e0202331.
Before 2018
Electron energy can oscillate near a crystal dislocation.
Mingda Li, Wenping Cui, M. S. Dresselhaus, Gang Chen
New J. Phys. 19, 013033 (2017).Proximity Driven Enhanced Magnetic Order at Ferromagnetic Insulator/Magnetic Topological Insulator Interface.
Mingda Li, Cui-Zu Chang, Brian Kirby, Michelle Jamer, Wenping Cui, Lijun Wu, Yimei Zhu, Don Heiman, Ju Li, Jagadeesh Moodera
Phys. Rev. Lett. 115, 087201 (2016).Magnetic Proximity Effect and Interlayer Exchange Coupling of Ferromagnetic/Topological Insulator/Ferromagnetic Trilayer.
Mingda Li, Wenping Cui, Jin Yu, Zuyang Dai, Zhe Wang, Ferhat Katmis, Wanlin Guo and Jagadeesh Moodera
Phys. Rev. B. 91, 014427 (2015).Tunable THz surface plasmon polariton based on a topological insulator/layered superconductor hybrid structure.
Mingda Li, Zuyang Dai, Wenping Cui, Zhe Wang, Ferhat Katmis, Jiayue Wang, Peisi Le, Lijun Wu, and Yimei Zhu
Phys. Rev. B. 89, 235432 (2014).Near-Field Optical Effect of a Core-Shell Nanostructure In Proximity to a Flat Surface.
Wenping Cui, Mingda Li, Zuyang Dai, Qingping Meng and Yimei Zhu
J. Chem. Phys. 140, 044109 (2014).Topological Effect of Surface Plasmon Excitation in Gapped Isotropic Topological Insulator Nanowires.
Mingda Li, Wenping Cui, Lijun Wu, Qingping Meng, Yimei Zhu, Yong Zhang, Weishu Liu and Zhifeng Ren
Canadian Journal of Physics 10, 1139 (2014).Transient Accelerating Scalar Models with Exponential Potential.
Wenping Cui, Yang Zhang, Zhengwen Fu
Res. Astron. Astrophys. 13, 629 (2013).